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Research

My research focuses on applied algorithms and software solutions answering the latest challenges of environmental genomics.
This research relies on my double competency in computer science & biology.
I develop bioinformatics solutions based on classification algorithms, evolutionary models (phylogenetics), alignment-free sequence comparison (k-mer approaches), biological databases and data mining.


I exploit these solutions to explore ecological and evolutionary problematics related to:

  • Biodiversity discovery & species identification based on environmental DNA.
  • Metazoan evolution and phylogenetics. 
  • Functionnal annotation of  genomes and inference of genetic relationships (orthology, paralogy...). 

 

Current affiliation

 

Currently hosted in the LIRMM, Université of Montpellier. 
In the context of a public-private partnerships. 

  

Past affiliations

 

 

Education

- Phd Bioinformatics, University of Strasbourg (2012)
- Master Bioinformatics & Structural Biology, University of Strasbourg (2007)
- License (bachelor) Biology & Computer Science  (2006).
- Technological diploma (DUT) Biochemistry and food industry (2005)

 

Short Bio 

Current

Since 2019, research officer in Spygen R&D department.

  • Development of a bioinformatic platform:
    - software developement and optimization
    - web app development
    - digitalisation of the R&D processes
    - automatisation of the production.
  • Establishment of public / private partnerships & co-developments

Teachings in Montpellier Science Faculty and the CNRS :

  • Computer Science department
  • BEE department (Biologie Ecologie Evolution) 
  • CNRS formations (tools and algorithms in phylogeny / NGS)

Previous

  • Research assistant in the ISEM / LIRMM / SupAgro, Montpellier, France. (2018-2019)
    Team MAB (Methods and Algorithms for Bioinformatics) & team PEM (Phylogeny and Molecular Evolution).
  • Research assistant in the LIRMM, Montpellier, France. (2016-2018)
    Team MAB (Methods and Algorithms for Bioinformatics)
    European consortium VIROGENESIS. (virogenesis.eu)
  • Research assistant in the Science Departement of the Natural History Museum of London, United Kingdom (2013-2016).
    Lab. of Pr. Alfried Vogler, NHM/Imperial College London.
    Biodiversity Initiative project. ("Breaking the taxonomic barrier")
  • Phd student, IGBMC, Strasbourg, France (2009-2012)
    Team LBGI (Laboratoire de Biologie et Génomique Intégratives)
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